Davies run definitely felt like it had greater highs, much more epic moments. I always just boot up an ep and rewatch the great moments from the RTD era. I actually liked Moffat much more when he was writing in the RTD era than him as a showrunner.
here's the breakdown from my point of view, good eps are bolded:
Rose -good pacey reintroduction to the doctor.
The End of the World - fun romp to finish up reintroducing the doctor
The Unquiet Dead -decentish
Aliens of London
World War Three - slitheen stuff is a bit childish, harriet jones is fairly fun
Dalek - great dalek reintroduction, really good work by eclestone here
The Long Game - some fun gameshow jabs. pegg!
Father's Day - fun paradox story
The Empty Child
The Doctor Dances - creepy, fun, and richard wilson
Boom Town - boring apart from the doctor stopping transmatting
Bad Wolf
The Parting of the Ways - good lead up, bad deus ex, brilliant last words.
The Christmas Invasion - meh story. shadow proclamation & "tired" were fun though
New Earth - snoozeville
Tooth and Claw - snoozeville II
School Reunion - brilliant guest stars(head, sladen, leeson), bit of a clanger of a story, but the guests make it fun enough.
The Girl in the Fireplace - brilliant.
Rise of the Cybermen
The Age of Steel - some good idea (parallel), but the altcybs were rather boring.
The Idiot's Lantern - okayish
The Impossible Planet
The Satan Pit - Great stuff. One of the very, very, few times we see something totally outside of the doctors understanding
Love & Monsters - boring
Fear Her - meh
Army of Ghosts
Doomsday - worth it just for the dalek/cybs interplay. The only RTD finale not to deus ex hard.
The Runaway Bride - not that fun. Tate was not as good a companion as she would later become.
Smith and Jones - great idea (impounding on the moon), but kinda boring in execution
The Shakespeare Code - "the paper's blank". great stuff
Gridlock - eternal traffic jam was done well
Daleks in Manhattan
Evolution of the Daleks - that accent. that suited dalek. bad bad bad bad. limitless potential not realised
The Lazarus Experiment - felt like added backstory to the finale(which it is, but it shouldn't be so obvious).
42 - average
Human Nature
The Family of Blood - brilliant stuff. vengeful doc is always interesting too.
Blink - one of the best who eps ever. the idea of the angels was brilliant. the execution of the idea was brilliant. how the doc was used was brilliant.
Utopia
The Sound of Drums
Last of the Time Lords -Another RTD deus ex machina. starts off brilliantly at the end of time, and with the masters take over of earth. gollum doctor is moronic, as is how that is reversed.
Time Crash - yes(not included in count).
Voyage of the Damned - had richard from "keeping up apperances", which is almost enough to save the snoozefest, but _not_quite_enough_
Partners in Crime - better tate, but still rather boring.
The Fires of Pompeii - where tate found her stride. great aztec-style debate between her and the doc in this ep.
Planet of the Ood
The Sontaran Stratagem
The Poison Sky
The Doctor's Daughter
The Unicorn and the Wasp - five boring episodes in a row, thankfully next we got the most sustained excellance in modern who...
Silence in the Library
Forest of the Dead - good "villains". good "weird stuff with good explantion"(dr moon). never been a great fan of river, but everything else was pulled off well.
Midnight - love "turn on perfect strangers" stuff like this
Turn Left
The Stolen Earth
Journey's End - if it wasn't for "yet another rtd deus ex", this three parter would be the greatest WHO related thing ever. so very good. only other thing I can say against it is that the shadow proclamation were crap after their big build up.
The Next Doctor - boring
Planet of the Dead - boring
waters of mars - triple boring
The End of Time -barely got bolded. Just edges on the other side of voyage of the damned, here Timothy Dalton is just enough to make this fun to watch, spittle and all.
The Eleventh Hour - oh hey, it's "smith and jones" again but on a larger scale. bit more fun this time around though.
The Beast Below - criminal misuse of "the demon headmaster" like this should be an offense under the law
Victory of the Daleks - bit of a letdown given the promise of the premise
The Time of Angels
Flesh and Stone - rather boring overall - the bit with blinded amy and the doc was nice
Vampires of Venice - boring
Amy's Choice - okayish
The Hungry Earth
Cold Blood - boringgggggggg even with rory
Vincent and the Doctor - ending saves it, really silly "villain" here.
The Lodger - corden, yuck
The Pandorica Opens
The Big Bang - worst nuwho finale. good setup ruined by another deus ex and we still don't know who that voice was years later.
A Christmas Carol - best christmas special. Story wasn't that great, but Gambon made this.
The Impossible Astronaut
Day of the Moon - only big nuwho multi ep "finale" without any trace of a deus ex. fantastic resolution.
The Curse of the Black Spot - boring
The Doctor's Wife - brilliant lore ep.
The Rebel Flesh
The Almost People - terribly boring two parter that ended on a amazing point.
A Good Man Goes to War - big finale feel but not really that great
Let's Kill Hitler
Night Terrors
The Girl Who Waited
The God Complex
Closing Time
The Wedding of River Song - I disliked this entire block, but none moreso then the wedding ep. having a stand in is enough to stop things....urgh
The Doctor, the Widow and the Wardrobe - boring
Asylum of the Daleks - pretty fun stuff, need more old school dalek action. nice twist
Dinosaurs on a Spaceship - real old school who. loved it
A Town Called Mercy - a moral in search of an episode
The Power of Three - fiveminstogothisisthevillainbyenowoppsforgottosaveotherpeopleonship
so:
RTD
s1 9/14
s2 6/14
s3 7/14
s4 7/14
sp 1/3
SM
s1 4/14
s2 3/14
s3 2/4
So I'd agree with the writing over showrunning thing. Moffat did deliver the only big story line multiparter without any hind of a deus ex though (astronaut/moon).