Reading this thread is hilarious. My god has Kojima ever screwed the pooch with respect to the timeline of the series, retcons and character progression/regression. It's an incomprehensibly convoluted mess. I doubt even Kojima knows whats going on anymore.
Does he even know the motivations of his own characters anymore?
Like seriously. I love the series, but I have no idea what The Boss, Big Boss, or Zero/Cypher were trying to accomplish.