Ok. It looks to me like a woman was raped, and the BYU honor code people are investigating her for possible honor code violations for the events around her rape, thus endangering the actual case against the rapist and effectively victimizing her a second time, plus a knock-on effect of disincentivizing victims from reporting sexual assault or rape. Maybe you can explain what I'm missing.
Majority of people in here are assuming that the sexual assault is an honor code violation and there is punishment for it. The school investigates said claims and find violations (alcohol consumption, ect). There is debate whether or not violations should be overlooked under said investigation but this is nothing new for society. If under a criminal investigation and illegal activity is found , said victim can still be charged for illicit activities. The only difference in this case is the "illegal activity" is a violation of the honor code. A difference? absolutely.. but again, this scenario is not new.