As chosen by you (and inspired by the voting for EviLore's top anime list), here's the NeoGAF top manga listing, starting with the top twenty-five:
1. Berserk
2. One Piece
3. Yotsuba&!
4. Akira
5. Monster
6. 20th Century Boys
7. Vagabond
8. Hajime no Ippo (Fighting Spirit)
9. Nausicaä of the Valley of the Wind
10. Lone Wolf and Cub
11. Dragon Ball
12. Blade of the Immortal
13. GTO
14. Slam Dunk
15. Maison Ikkoku
16. Naruto
17. Death Note
18. Azumanga Daioh
19. Fullmetal Alchemist
20. Eden
21. Hunter X Hunter
22. Ruroni Kenshin
23. Beck
24. Genshiken
25. Claymore
And here's the full list:
Rank - Name - Points - Number of Votes
1 Berserk 316 42
2 One Piece 204 30
3 Yotsub&! 174 25
4 Akira 170 22
5 Monster 152 22
6 20th Century Boys 127 16
7 Vagabond 124 20
8 Hajime no Ippo 120 18
9 Nausicaa 118 15
10 Lone Wolf & Cub 99 14
11 Dragon Ball 98 15
12 Blade of the Immortal 95 14
13 GTO 91 13
14 Slam Dunk 89 12
15 Maison Ikkoku 88 13
16 Naruto 86 16
17 Death Note 84 15
18 Azumanga Daioh 79 11
19 Full Metal Alchemist 69 13
20 Eden 68 9
21 Hunter X Hunter 67 10
22 Ruroni Kenshin 61 10
23 Beck 58 12
24 Genshiken 58 10
25 Claymore 55 10
26 Buddha 54 7
27 BLAME 53 7
28 Battle Angel Alita 51 9
29 Gantz 48 11
30 Bleach 45 9
31 Phoenix 42 5
32 Welcome to the NHK 39 6
33 Kare Kano 37 6
34 Initial D 32 4
35 Sanctuary 32 4
36 Sgt. Frog 31 5
37 Kimagure Orange Road 30 4
38 Homonculus 29 4
39 Jojo's Bizzare Adventure 29 6
40 Nodame Cantabile 29 7
41 Trigun 29 6
42 Yokohama Shopping Log 29 5
43 Nana 28 6
44 Eyeshield 21 27 5
45 Hellsing 27 5
46 Ghost in the Shell 26 4
47 Video Girl Ai 25 5
48 Sailor Moon 24 3
49 Chobits 22 4
50 Ranma 1/2 22 5
51 Planetes 20 4
52 Fist of the North Star 19 4
53 Pluto 19 4
54 Astroboy 18 3
55 Fruits Basket 17 4
56 Houshin Engi 17 3
57 Saikano 16 4
58 Tsubasa Chronicles 16 2
59 Mushishi 15 2
60 Samurai Executioner 15 4
61 Appleseed 14 2
62 Boys Over Flowers 14 3
63 Detective Conan 14 4
64 "I""s" 14 3
65 Shaman King 14 2
66 Yakitate!! Japan 14 3
67 Black Jack 13 2
68 Doraemon 13 2
69 Dr. Slump 13 5
70 Emma 13 2
71 Katekyo ****** Reborn 13 3
72 Team Medical Dragon 13 2
73 Bokurano 12 2
74 Gintama 12 2
75 Paradise Kiss 12 2
76 Vinland Saga 12 3
77 Ice Blade (Jiraishin) 11 2
78 Inu Yasha 11 2
79 Touch 11 2
80 xxxHolic 11 3
81 2001 Nights 10 1
82 Ah! My Goddess 10 1
83 Ares 10 2
84 Caravan Kidd 10 1
85 Card Captor Sakura 10 3
86 D.Gray-Man 10 2
87 Dragon Quest Retsuden - Emblem of roto 10 1
88 Fairy Tail 10 2
89 Golgo 13 10 1
90 Iihito 10 1
91 Katsu 10 1
92 Kilico 10 1
93 Ouran High School Host Club 10 1
94 River's Edge 10 1
95 Rough 10 1
96 Saint Seiya 10 1
97 Tenjo Tenge 10 3
98 Voices from a Distant Star 10 1
99 Bastard 9 1
100 Bio Booster Armour Guyver 9 2
101 Brave Story -Shinsetsu- 9 1
102 City Hunter 9 3
103 Ginga Nagareboshi Gin 9 1
104 Gravitation 9 1
105 Parasyte 9 1
106 Salad Days 9 2
107 Sexy Voice and Robo 9 1
108 The Cherry Project 9 1
109 The Drifting Classsroom 9 2
110 Boku no Futasu no Tsubasa 8 1
111 Cowboy Bebop 8 1
112 Cromartie High School 8 3
113 Cupid no Itazura -Nijidama- 8 1
114 Devilman 8 1
115 Flame of Recca 8 1
116 Golden Boy 8 1
117 Legend of Basara 8 1
118 MS Gundam: Ecole du Ciel 8 1
119 Rebirth 8 1
120 Shin Angyo Onshi 8 2
121 Yamada Tarou no Monogatari 8 1
122 Dear Boys 7 1
123 Excel Saga 7 1
124 Ghost in the Shell: Man Machine Interface 7
125 H2 7 2
126 Honey & Clover 7 1
127 Kimi Shika Iranai 7 1
128 Kobato 7 1
129 Mx0 7 1
130 Outlanders 7 1
131 Sayonara Zetsubou-sensei 7 1
132 School Rumble 7 3
133 Shigururi 7 1
134 "Town of Evening Calm, Country of Cherry Blossoms" 7 1
135 What's Michael 7 1
136 Air Gear 6 1
137 A****-chan Overdrive 6 1
138 Crying Freeman 6 1
139 Evangelion 6 1
140 Flowers and Bees 6 1
141 Giant Robo 6 1
142 Japan Tengu Party Illustrated 6 1
143 Kekkaishi 6 1
144 Kochikame 6 1
145 Lawful Drug 6 1
146 Path of the Assassin 6 1
147 Please Save My Earth 6 1
148 Sengoku 6 1
149 Shamo 6 2
150 The Walking Man 6 1
151 Toritsu Mizusho (AKA The School of Water Business) 6 1
152 Tsukuyomi Moon Phase 6 1
153 Zombie Powder 6 1
154 Abandon the Old in Tokyo 5 1
155 Abstraction 5 1
156 Angel Densetsu 5 1
157 Detective Kindaichi 5 1
158 Even A Monkey Can Draw Manga 5 1
159 Ichigo 100% 5 1
160 If I See You In My Dreams 5 1
161 Iron Wok Jan 5 1
162 Kashimashi ~Girl Meets Girl~ 5 1
163 Koroshiya Ichi 5 1
164 Let Dai 5 1
165 Negima 5 2
166 Orion 5
167 Pita-ten 5 1
168 Tennen de Sozai de Ikou 5 1
169 Yawara! 5 1
170 666 Satan 4 1
171 Barefoot Gen 4 1
172 FLCL 4 1
173 Gunsmith Cats 4 1
174 Harukana Machi-E 4 1
175 Karin 4 1
176 Lady Snowblood 4 1
177 One Pound Gospel 4 1
178 Ookiku Furikabutte 4 2
179 OverDrive 4 1
180 Revolutionary Girl Utena 4 1
181 Stray Little Devil 4 1
182 The Violinist of Hamelin 4 1
183 They Were 11 4 1
184 Urusei Yatsura 4 2
185 Uzumaki 4 1
186 A Wonderful Feeling 3 1
187 Biomega 3 1
188 DNA^2 3 1
189 Five Star Stories 3 2
190 Hayate the Combat Butler 3 1
191 Higurashi 3 1
192 Hourou Musuko 3 1
193 King of Hell Majeh 3 1
194 Magical Knights Rayearth 3 1
195 MPD Psycho 3 1
196 Narutaru 3 1
197 PPOI 3 1
198 Ray 3 1
199 Those Who Hunt Elves 3 1
200 Believers 2 1
201 Boys Be 2nd Season 2 1
202 Ceres: Celestial Legend 2 1
203 D-ASH 2 1
204 Fire Candy 2 1
205 Futari Ecchi 2 1
206 Hana-Kimi 2 1
207 Hikaru no Go 2 1
208 Kurasagi Corpse Delivery Service 2 1
209 Love Hina 2 2
210 Midori no Hibi 2 1
211 No Need For Tenchi 2 1
212 Ryogaku no Kajitsu 2 1
213 Aishiteruze Baby 1 1
214 Battle Royale 1 1
215 Black and White 1 1
216 Grappler Baki 1 1
217 Ikkitousen 1 1
218 Lolicon Phoenix 1 1
219 Lupin the 3rd 1 1
220 Major 1 1
221 MeruPuri: Marchen Prince 1 1
222 Natsuko no Sake 1 1
223 Pyuu to Fuku! Jaguar 1 1
224 Sakuratetsu Taiwahen 1 1
225 Shugo Chara 1 1
226 Swan 1 1
227 Tsuri ni Ikuyo! 1 1
228 Yuu Yuu Hakasho 1 1
229 Zetman 1 1
For anyone using this list as a starting point, I've provided links for the top twenty-five manga on the list where you can find more information about each series. I'd encourage everyone who voted on this list to champion some of their favorite titles below, providing a bit of art, a description, and a link of some sort. I'm also looking forward to seeing everyone hash out the details. Enjoy!
FnordChan
1. Berserk
2. One Piece
3. Yotsuba&!
4. Akira
5. Monster
6. 20th Century Boys
7. Vagabond
8. Hajime no Ippo (Fighting Spirit)
9. Nausicaä of the Valley of the Wind
10. Lone Wolf and Cub
11. Dragon Ball
12. Blade of the Immortal
13. GTO
14. Slam Dunk
15. Maison Ikkoku
16. Naruto
17. Death Note
18. Azumanga Daioh
19. Fullmetal Alchemist
20. Eden
21. Hunter X Hunter
22. Ruroni Kenshin
23. Beck
24. Genshiken
25. Claymore
And here's the full list:
Rank - Name - Points - Number of Votes
1 Berserk 316 42
2 One Piece 204 30
3 Yotsub&! 174 25
4 Akira 170 22
5 Monster 152 22
6 20th Century Boys 127 16
7 Vagabond 124 20
8 Hajime no Ippo 120 18
9 Nausicaa 118 15
10 Lone Wolf & Cub 99 14
11 Dragon Ball 98 15
12 Blade of the Immortal 95 14
13 GTO 91 13
14 Slam Dunk 89 12
15 Maison Ikkoku 88 13
16 Naruto 86 16
17 Death Note 84 15
18 Azumanga Daioh 79 11
19 Full Metal Alchemist 69 13
20 Eden 68 9
21 Hunter X Hunter 67 10
22 Ruroni Kenshin 61 10
23 Beck 58 12
24 Genshiken 58 10
25 Claymore 55 10
26 Buddha 54 7
27 BLAME 53 7
28 Battle Angel Alita 51 9
29 Gantz 48 11
30 Bleach 45 9
31 Phoenix 42 5
32 Welcome to the NHK 39 6
33 Kare Kano 37 6
34 Initial D 32 4
35 Sanctuary 32 4
36 Sgt. Frog 31 5
37 Kimagure Orange Road 30 4
38 Homonculus 29 4
39 Jojo's Bizzare Adventure 29 6
40 Nodame Cantabile 29 7
41 Trigun 29 6
42 Yokohama Shopping Log 29 5
43 Nana 28 6
44 Eyeshield 21 27 5
45 Hellsing 27 5
46 Ghost in the Shell 26 4
47 Video Girl Ai 25 5
48 Sailor Moon 24 3
49 Chobits 22 4
50 Ranma 1/2 22 5
51 Planetes 20 4
52 Fist of the North Star 19 4
53 Pluto 19 4
54 Astroboy 18 3
55 Fruits Basket 17 4
56 Houshin Engi 17 3
57 Saikano 16 4
58 Tsubasa Chronicles 16 2
59 Mushishi 15 2
60 Samurai Executioner 15 4
61 Appleseed 14 2
62 Boys Over Flowers 14 3
63 Detective Conan 14 4
64 "I""s" 14 3
65 Shaman King 14 2
66 Yakitate!! Japan 14 3
67 Black Jack 13 2
68 Doraemon 13 2
69 Dr. Slump 13 5
70 Emma 13 2
71 Katekyo ****** Reborn 13 3
72 Team Medical Dragon 13 2
73 Bokurano 12 2
74 Gintama 12 2
75 Paradise Kiss 12 2
76 Vinland Saga 12 3
77 Ice Blade (Jiraishin) 11 2
78 Inu Yasha 11 2
79 Touch 11 2
80 xxxHolic 11 3
81 2001 Nights 10 1
82 Ah! My Goddess 10 1
83 Ares 10 2
84 Caravan Kidd 10 1
85 Card Captor Sakura 10 3
86 D.Gray-Man 10 2
87 Dragon Quest Retsuden - Emblem of roto 10 1
88 Fairy Tail 10 2
89 Golgo 13 10 1
90 Iihito 10 1
91 Katsu 10 1
92 Kilico 10 1
93 Ouran High School Host Club 10 1
94 River's Edge 10 1
95 Rough 10 1
96 Saint Seiya 10 1
97 Tenjo Tenge 10 3
98 Voices from a Distant Star 10 1
99 Bastard 9 1
100 Bio Booster Armour Guyver 9 2
101 Brave Story -Shinsetsu- 9 1
102 City Hunter 9 3
103 Ginga Nagareboshi Gin 9 1
104 Gravitation 9 1
105 Parasyte 9 1
106 Salad Days 9 2
107 Sexy Voice and Robo 9 1
108 The Cherry Project 9 1
109 The Drifting Classsroom 9 2
110 Boku no Futasu no Tsubasa 8 1
111 Cowboy Bebop 8 1
112 Cromartie High School 8 3
113 Cupid no Itazura -Nijidama- 8 1
114 Devilman 8 1
115 Flame of Recca 8 1
116 Golden Boy 8 1
117 Legend of Basara 8 1
118 MS Gundam: Ecole du Ciel 8 1
119 Rebirth 8 1
120 Shin Angyo Onshi 8 2
121 Yamada Tarou no Monogatari 8 1
122 Dear Boys 7 1
123 Excel Saga 7 1
124 Ghost in the Shell: Man Machine Interface 7
125 H2 7 2
126 Honey & Clover 7 1
127 Kimi Shika Iranai 7 1
128 Kobato 7 1
129 Mx0 7 1
130 Outlanders 7 1
131 Sayonara Zetsubou-sensei 7 1
132 School Rumble 7 3
133 Shigururi 7 1
134 "Town of Evening Calm, Country of Cherry Blossoms" 7 1
135 What's Michael 7 1
136 Air Gear 6 1
137 A****-chan Overdrive 6 1
138 Crying Freeman 6 1
139 Evangelion 6 1
140 Flowers and Bees 6 1
141 Giant Robo 6 1
142 Japan Tengu Party Illustrated 6 1
143 Kekkaishi 6 1
144 Kochikame 6 1
145 Lawful Drug 6 1
146 Path of the Assassin 6 1
147 Please Save My Earth 6 1
148 Sengoku 6 1
149 Shamo 6 2
150 The Walking Man 6 1
151 Toritsu Mizusho (AKA The School of Water Business) 6 1
152 Tsukuyomi Moon Phase 6 1
153 Zombie Powder 6 1
154 Abandon the Old in Tokyo 5 1
155 Abstraction 5 1
156 Angel Densetsu 5 1
157 Detective Kindaichi 5 1
158 Even A Monkey Can Draw Manga 5 1
159 Ichigo 100% 5 1
160 If I See You In My Dreams 5 1
161 Iron Wok Jan 5 1
162 Kashimashi ~Girl Meets Girl~ 5 1
163 Koroshiya Ichi 5 1
164 Let Dai 5 1
165 Negima 5 2
166 Orion 5
167 Pita-ten 5 1
168 Tennen de Sozai de Ikou 5 1
169 Yawara! 5 1
170 666 Satan 4 1
171 Barefoot Gen 4 1
172 FLCL 4 1
173 Gunsmith Cats 4 1
174 Harukana Machi-E 4 1
175 Karin 4 1
176 Lady Snowblood 4 1
177 One Pound Gospel 4 1
178 Ookiku Furikabutte 4 2
179 OverDrive 4 1
180 Revolutionary Girl Utena 4 1
181 Stray Little Devil 4 1
182 The Violinist of Hamelin 4 1
183 They Were 11 4 1
184 Urusei Yatsura 4 2
185 Uzumaki 4 1
186 A Wonderful Feeling 3 1
187 Biomega 3 1
188 DNA^2 3 1
189 Five Star Stories 3 2
190 Hayate the Combat Butler 3 1
191 Higurashi 3 1
192 Hourou Musuko 3 1
193 King of Hell Majeh 3 1
194 Magical Knights Rayearth 3 1
195 MPD Psycho 3 1
196 Narutaru 3 1
197 PPOI 3 1
198 Ray 3 1
199 Those Who Hunt Elves 3 1
200 Believers 2 1
201 Boys Be 2nd Season 2 1
202 Ceres: Celestial Legend 2 1
203 D-ASH 2 1
204 Fire Candy 2 1
205 Futari Ecchi 2 1
206 Hana-Kimi 2 1
207 Hikaru no Go 2 1
208 Kurasagi Corpse Delivery Service 2 1
209 Love Hina 2 2
210 Midori no Hibi 2 1
211 No Need For Tenchi 2 1
212 Ryogaku no Kajitsu 2 1
213 Aishiteruze Baby 1 1
214 Battle Royale 1 1
215 Black and White 1 1
216 Grappler Baki 1 1
217 Ikkitousen 1 1
218 Lolicon Phoenix 1 1
219 Lupin the 3rd 1 1
220 Major 1 1
221 MeruPuri: Marchen Prince 1 1
222 Natsuko no Sake 1 1
223 Pyuu to Fuku! Jaguar 1 1
224 Sakuratetsu Taiwahen 1 1
225 Shugo Chara 1 1
226 Swan 1 1
227 Tsuri ni Ikuyo! 1 1
228 Yuu Yuu Hakasho 1 1
229 Zetman 1 1
For anyone using this list as a starting point, I've provided links for the top twenty-five manga on the list where you can find more information about each series. I'd encourage everyone who voted on this list to champion some of their favorite titles below, providing a bit of art, a description, and a link of some sort. I'm also looking forward to seeing everyone hash out the details. Enjoy!
FnordChan