No company gets nearly as much vitriol with its issues either. Just look at the uproar over tech specs from lay-person GAF analysts, the massive thread over a lack of a web browser, etc.
Nintendo shouldn't get a pass on the major issues. But as a consumer who does like Nintendo's IPs and yes, hardware as well, I get annoyed by those that show the slightest bit of indignation with anything that's done outside the norm (i.e. whatever Sony and Microsoft are doing). Having said that, I get equally annoyed with those that will defend any and every boneheaded move Nintendo does.
As for this, It's an issue that clearly needs to be sorted out. This isn't a deal breaker for me though as it seems like a nuisance and I do have confidence that they will work it out one way or another. Hell, I just went through a 2-3 month wait for Oculus firmware which resolved an issue that I'd had since the launch of Touch. This'll probably be worked out way sooner than that.