I guess so? What are you not understanding here? Other than memory setup (which is clearly superior on the PS4) these two consoles have basically identical architectures, but with the PS4 having more GPU power and higher memory bandwidth. It's simply more powerful in some ways and less powerful in no ways at all.
So no, there should be no real reason for a game to ever run worse on the PS4, unless it instead looks better. If it looks the same but still runs worse, then the devs must have purposefully gimped it. Or Sony's dev tools are absolute shit, but from what we've been hearing they are actually great.