In Japan, "limited quantities" generally means "we're not going to keep manufacturing this to keep it stocked in the long run". If there's no announced number of units, they generally produce based on retail demand, so there aren't really "lost" sales in that sense. Most people don't really care about a game themed bundle if they just want the console. The ones who do will be preordering and enquiring about it now.
Guess those bundle is not going to had the same effect as 2DS Pokemon bundle?(Sold around 100k?)