As someone who voted for Fire Emblem Fates, I'm really surprised by all the hate it seems to be get on GAF. I guess personally, I'll take a game with a 1/10 story but 10/10 gameplay (or the other way around, a game with crap gameplay but amazing story) over a game that's a 7/10 or even an 8/10 in both categories.
But while I can see why some people prefer older (pre 3DS) Fire Emblem games, I really can't understand why so many people seem to rank Awakening so far above Fates. Even if you really hate the story in Conquest, there's still Birthright and Revelation, and I personally didn't think the story there was that much worse than Awakening. They were all just generic and forgettable, with incredibly one note characters.
On the other hand, while Birthright lacks Conquest's amazing map design, it still drastically improves on Awakening's gameplay, mostly by fixing the completely broken pair-up system and at least to some extent nerfing some absurdly broken weapons/abilities/characters to make it harder to solo entire maps with a single character.
Other than that, it's really nice to see Alpha Protocol made top 50. While I didn't think it was quite good enough to make my top 20, it's still a very interesting and unique take on RPGs, and a game that very much deserves some spotlight.