Replicant said:
Shinji IS an interesting character. You have to look at this list with the realization that most Japanese viewers are not bogged down with macho-ism bullshit that some of us are fixated on. To them it's okay to have a protagonist who's incredibly flawed and weak. The other point is that Shinji was a teenager who's learning how to understand people better. He fucked up terribly but it's not like he's done growing up.
Looking at the lists evolving decade by decade, it seems like Japanese viewers just weigh yaoi/loli fanservice and giant robots more and more.
How the fuck else do you explain Kaworu being in 2 episodes and being considered one of the greatest characters
of all time?
He was very influential for every weenie male lead in anime from then on out.
I remember watching a few episodes of the original .hack and thinking "Eww, they got Shinji all over the protagonist."
Himuro said:
The best anime tv series of the 2000's goes to either Ghost in the Shell: SAC or Gankutsuoh: Count of Monte Cristo.
This x1000.
Also, Albert, The Count, and Franz are definitely great characters, and definitely don't fall into the macho-ism of the characters I mentioned above (there are fairly strong homosexual undertones in the series between Albert/Count and Albert/Franz).
To tie off my Shinji/Rei rant, I appreciate that they're two of the most loved characters in Anime from one of the most loved shows. But to say they're particularly deep or well-written would be akin to making a videogame list about best characters and putting Master Chief, Doom Marine, or Link. They aren't so much great characters as they are memorable avatars for the audience's roleplaying.