Definitely, Naturopathy (that doesn't incorporate homeopathy, some naturopaths do) is a whole bunch better than homeopathy - but there are still issues.
For example, one of my friends was telling me about how her naturopath convinced her to stop taking birth control, and now that she's gotten serious with her boyfriend, she wants to - but she's afraid of the toxins and negative side effects of birth control. So she is looking into more natural methods of BC - like tracking her cycle.
I mean, not a huge deal - and I know this friend if she had any serious issues, she would go to her doctor (in fact she went to her doctor afterward and asked about BC, and the doctor did recommend BC pills) - but for non-emergency situations, she seems to go with the naturopaths prescription. Which is usually vitamin pills.