I haven't been on the Internet during Wind Waker times, but hell, this has to be the most divisive game in the last couple of years. Personally, I absolutely loved it. There were some lows, but the heights the highs of it reached negated all of it. Pre-5th dungeon part was probably the best segment of any game I've ever played and seriously, that's the PRE-DUNGEON parts. Like, the part where any previous Zelda games had ever excelled at.
Hell, I even liked swimming controls. To me they are the most accurate underwater form of control in 3D environment I've ever encountered. I can't think of a single game before (at least 3D ones) where I ever felt I had complete control over, yet here it is. A mere thought of any problems with swimming controls in this game hadn't even came across my mind until I read GAF.
So, maybe I'm biased. This is a curious case as the lows are quite annoying. But everything else is just so excellent that I simply can't bring myself into hating on this game. The only other comparable game I can think of is RE4, where everything you've encountered so far got used into new ways. Again, especially the pre-5th dungeon segment, which I'm in love with and can't wait until I get to it again. And even though the lows are lower (there are indeed some horrible design decisions here), the highs go into a territory unseen before, especially if the length of the game is considered.