This should get you started. Here is the standard appaws $1000 build. It's pretty basic, similar to what you would find in the OP.....
PCPartPicker part list:
http://pcpartpicker.com/p/xTBtrH
Price breakdown by merchant:
http://pcpartpicker.com/p/xTBtrH/by_merchant/
CPU: Intel Core i5-4690K 3.5GHz Quad-Core Processor ($239.99 @ Newegg)
CPU Cooler: Cooler Master Hyper 212 EVO 82.9 CFM Sleeve Bearing CPU Cooler ($34.99 @ Newegg)
Motherboard: ASRock Z97 PRO4 ATX LGA1150 Motherboard ($99.49 @ Newegg)
Memory: G.Skill Ares Series 8GB (2 x 4GB) DDR3-1866 Memory ($81.99 @ Newegg)
Storage: Crucial MX100 256GB 2.5" Solid State Drive ($99.99 @ Newegg)
Storage: Western Digital Caviar Blue 1TB 3.5" 7200RPM Internal Hard Drive ($54.99 @ Newegg)
Video Card: Asus Radeon R9 280X 3GB DirectCU II Video Card ($243.98 @ Newegg)
Case: NZXT S340 (Black) ATX Mid Tower Case ($74.79 @ Newegg)
Power Supply: SeaSonic 620W 80+ Bronze Certified Fully-Modular ATX Power Supply ($89.99 @ Newegg)
Total: $1020.20
Prices include shipping, taxes, and discounts when available
Generated by PCPartPicker 2014-11-16 03:11 EST-0500
It has a decent size SSD for your OS and games, and a TB hard drive for storage. Cases are personal taste, of course, this is my current budget favorite. The old CPU cooler standby, the EVO 212 will give you a stable mid-level overclock. The RAM is low profile so you have no problems fitting your heatsink on. If you wanted an Nvidia GPU, you could substitute in a 4GB 760 for around the same price....it won't be as powerful as the 280X....but I know some people are very brand loyal.