I was only kidding. There have been plenty of solid refutations of why Indoctrination Theory doesn't work and why the ending would still be terrible if Indoctrination Theory was true. This thread does move fast so I can't isolate those posts. I had a response that I felt as rather good -- of course -- but it's buried at least 30 pages deep at this point.
Some refutations include how Indoctrination was written in, then out of the plot; confirmation bias; Indoctrination Theory still avoids choice; why didn't Bioware clarify Indoctrination after outcry; and much, much more. For me, it boiled down to two options: Either Bioware's writers are absolutely brilliant and have outsmarted us all, or it's another case of terrible writing. Which is more plausible?
Dang, I'd like to read some of those and see what I think. Perhaps I'll have to go back through and see if I can find some.
Its extremely hard for me to believe that suddenly they just had bad writing at the end, unless there were other factors like time, being forced, etc. Even those considered though, there are just too many odd things that line up for it to be just bad writing.
If it that its "brilliant", its brilliant in that its not obvious to us. Looking at it, it deep, but fairly simple. They know what indoctrinated is so make some oddities and indoctrination type things, go back and put the boy in (wouldn't be hard as its just dream sequences and a bit at the beginning). Indoctrination was a possibility in my mind even before getting the game since its reapers and we've seen it since the start of the first game.
Why would they do this though? Simple. DLC. EA loves DLC, and ME2 had loads. At the end of the game it implies more will be coming with that odd data pad bit. Adding DLC mid game after people have completed it would be kind of pointless, and not many would go back for it, not that I agree they'd go back for ending DLC. So, they do this, make us think, make us speculate, then BAM, DLC that picks up with Shephard on Earth in rubble. Maybe you broke the indoctrination, maybe you didn't. From here we'll branch out into other paths and get the endings we wanted.
These thoughts come from the indoctrination vid and Paul Tassi on Forbes. It seems to make sense for me in such a way, that there is no way they'd get that lucky from bad writing. I guess we'll see.
The sad part is I think I am OK with this as I just want a better ending. :/ I do feel thought that based on what we have now, and whatever they do to handle the situation, Bioware has kind of fucked itself over and tarnished its name.
Edit: I'm tired. Sorry for the rambling, hopefully it make sense. I'm sure its already been said though so I doubt I needed to say it again.