Manmademan
Member
Didn't Nick Fury state that to be one of the reasons behind it in the first place? I haven't seen Thor 2 yet, but Iron Man 3's plot also revolved around fallout from the aliens in Avengers, so maybe what that sort of trauma does to a person is one of the main themes of phase 2?
Also, my girlfriend picked up on the Ironman line in this movie and asked where Ironman was during all this? Obviously that's just something you have to ignore in this sort of movie, but does anyone have a better answer than that? I could've told her he destroyed the suits at the end of Ironman 3, but the fact that those still exist according to Fury puts this before it in the timeline (or after he makes a new suit, but I kind of expect that to happen in Avengers 2.)
Someone else mentioned that the events of Cap 2 happen within the span of about 72 hours. That's not a ton of time to call in the cavalry, especially when Fury was in critical condition for most of that, and Cap was on the run and marked as a fugitive.
But besides all that, monitoring Starks lines of communication and preventing any attempt by fury or Rogers to contact him is something SHIELD would be more than capable of doing.