Neuromancer said:Just beat the game (first playthrough.)
What the hell happened?! Is there a place where I can read up on it or should I just dive into playthrough 2?
Go for playthrough 2. You get a lot of added perspective, and any real discussion of the story involves things shown/clarified in there.
I honestly wish the game reset after ending A, and forced you through the first New Game+ prior to hitting the end credits the first time.