They dont seem to be that happy that that Thor-Clone killed Bill Foster and also it was just an amplified robot, so I am ok with them lobotomize it after such an incidient, espescially since it doesnt showed a own personality like other Marvel Robots like Machine Man or The Vision.When they clone a robot Thor that kills someone and Reed lobotomises it with a drill in a panel designed to make him lookas much like Doctor Frankenstein as possible?
And while I am siding with Cap without the sliegthest moment of doubt, you can really see how Steve only fights for his own goals in the, even when he is on the good side with not siding with murderers and putting people in concentration camps.