Seeing a 3D film in a crappy cinema with half-broken glasses would likely diminish the experience. I've been to cinemas with the wrong aspect ratio, or terrible sound or distorted speakers, or where the seats are uncomfortable or jerks are speaking the whole time or kicking the seats. All of these have been negative experiences, causing me to enjoy the film less than I otherwise might have.
Sure, but you don't judge the film by it. You judge the cinema, or the equipment, or the experience as a whole.