I don't understand this either. 1) Scott specifically backed away from this (while still alluding to it) and 2) I wouldn't see this as a reason to hate the movie even if they had gotten closer to it.
I am totally baffled by the posts that say "I liked it when I left the theater but dislike it now that I know about space Jesus". I think it is a fun concept. Also, Lindelof said in an interview that, similar to the sacrifice engineer scene in this, he could imagine the sequel starting with a scene on earth 2,000 years ago depicting The Incident. No matter what it is not going to be a strait forward as literally Jesus as we know him from history/bible was an engineer. There is a story to tell there if they want to go that route.
I would love to see that movie.
Still in stage 3 I see.